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Graph engine · MapForge

The engine that builds the graph.

Point MapForge at a domain. It ingests the sources, links the entities, scores its own confidence on every connection, and serves the result through a production API. It built MicroMap, and it builds every customer's Company Graph inside Operon. You can also license the engine on its own.

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Any format. Any biological domain.

Biological data rarely arrives as a clean spreadsheet. MapForge reads assay formats as well as tables: variant calls, annotations, microbiome tables, single-cell matrices, mass-spec results, spreadsheets and database dumps.

VCFGFF/GTFBIOMAnnData10xmzTabXLSXCSV/TSVParquetSQL
B. fragilisNCBI:817ingests the sourceslinks the entitiesscored for confidencequeued for human reviewenters the graphIllustrative example — not live production data
B. fragilisNCBI:817ingests the sourceslinks the entitiesscored for confidencequeued for human reviewenters the graphIllustrative example — not live production data
Review

Every link is scored, then reviewed.

Every entity link MapForge proposes is scored for confidence and queued for human review before it enters the graph.

Proposed linkPending review
Faecalibacterium prausnitzii
— produces →
Butyrate
Confidence92%
Sourced from 3 references · awaiting reviewer sign-off
A production API

Call it from your own systems.

RBAC & rate limits
Access control and throughput scoped per organization.
Confidence on every edge
Every connection comes back with its own confidence score.
REST and MCP
Query entities, relationships and provenance directly, or from an agent.

Graphs are designed to federate at the graph layer, so one query can span several graphs while each keeps its own provenance. MicroMap, the microbiome graph, is the one every Operon deployment uses today.

The worked example

MicroMap is what MapForge built first.

The default knowledge graph behind every Operon deployment: 1.15M+ microbial taxa and source-linked microbe–disease associations, built from public sources and reviewed before anything was written.

See the knowledge network →
Deployment

Runs where your data already lives.

Managed
Hosted and maintained by Graphomics; your team queries it.
Self-hosted
Deployed inside your own environment, under your controls.
Licensed
License the engine outright and run it anywhere.

Ready to build your own graph?

Read the DocsTalk to Us
or email info@graphomics.com